add devel/doxygen/files/

devel/doxygen/files/patch-CMakeLists.txt

@@ -0,0 +1,10 @@
+--- CMakeLists.txt.orig	2015-06-16 17:42:32 UTC
++++ CMakeLists.txt
+@@ -122,7 +122,6 @@ if (win_static)
+ endif()
+ 
+ 
+-add_subdirectory(libmd5)
+ add_subdirectory(qtools)
+ add_subdirectory(vhdlparser)
+ add_subdirectory(src)

devel/doxygen/files/patch-doc-doxygen_manual.tex

@@ -0,0 +1,11 @@
+--- doc/doxygen_manual.tex.orig	2015-02-28 15:26:54 UTC
++++ doc/doxygen_manual.tex
+@@ -13,7 +13,7 @@
+ % input used in their production; they are not affected by this license.
+ 
+ \documentclass{book}
+-\usepackage[a4paper,left=2.5cm,right=2.5cm,top=2.5cm,bottom=2.5cm]{geometry}
++\usepackage[left=2.5cm,right=2.5cm,top=2.5cm,bottom=2.5cm]{geometry}
+ \usepackage{makeidx}
+ \usepackage{natbib}
+ \usepackage{graphicx}

devel/doxygen/files/patch-doc_CMakeLists.txt

@@ -0,0 +1,11 @@
+--- doc/CMakeLists.txt.orig	2017-10-31 19:36:00 UTC
++++ doc/CMakeLists.txt
+@@ -168,7 +168,7 @@ install(FILES
+         "${PROJECT_BINARY_DIR}/man/doxywizard.1"
+         "${PROJECT_BINARY_DIR}/man/doxysearch.1"
+         "${PROJECT_BINARY_DIR}/man/doxyindexer.1"
+-        DESTINATION ${CMAKE_INSTALL_MANDIR}/man1
++        DESTINATION man/man1
+ )
+ 
+ install(FILES

devel/doxygen/files/patch-md5-Doxyfile

@@ -0,0 +1,12 @@
+--- Doxyfile.orig	2014-08-14 17:46:42 UTC
++++ Doxyfile
+@@ -261,8 +261,7 @@
+ MACRO_EXPANSION        = YES
+ EXPAND_ONLY_PREDEF     = YES
+ SEARCH_INCLUDES        = YES
+-INCLUDE_PATH           = qtools \
+-                         libmd5
++INCLUDE_PATH           = qtools
+ INCLUDE_FILE_PATTERNS  =
+ PREDEFINED             =
+ EXPAND_AS_DEFINED      =

devel/doxygen/files/patch-md5-definition

@@ -0,0 +1,25 @@
+--- src/definition.cpp.orig	2015-01-03 22:38:57 UTC
++++ src/definition.cpp
+@@ -17,6 +17,7 @@
+ 
+ #include <ctype.h>
+ #include <qregexp.h>
++#include <sys/types.h>
+ #include "md5.h"
+ #include <stdio.h>
+ #include <stdlib.h>
+@@ -537,13 +538,11 @@ void Definition::writeDocAnchorsToTagFil
+ 
+ bool Definition::_docsAlreadyAdded(const QCString &doc,QCString &sigList)
+ {
+-  uchar md5_sig[16];
+   QCString sigStr(33);
+   // to avoid mismatches due to differences in indenting, we first remove
+   // double whitespaces...
+   QCString docStr = doc.simplifyWhiteSpace();
+-  MD5Buffer((const unsigned char *)docStr.data(),docStr.length(),md5_sig);
+-  MD5SigToString(md5_sig,sigStr.rawData(),33);
++  MD5Data((const unsigned char *)docStr.data(),docStr.length(),sigStr.rawData());
+   //printf("%s:_docsAlreadyAdded doc='%s' sig='%s' docSigs='%s'\n",
+   //    name().data(),doc.data(),sigStr.data(),sigList.data());
+   if (sigList.find(sigStr)==-1) // new docs, add signature to prevent re-adding it

devel/doxygen/files/patch-md5-dirdef

@@ -0,0 +1,19 @@
+--- src/dirdef.cpp.orig	2015-01-03 22:38:57 UTC
++++ src/dirdef.cpp
+@@ -1,3 +1,4 @@
++#include <sys/types.h>
+ #include "md5.h"
+ 
+ #include "dirdef.h"
+@@ -81,10 +82,8 @@ void DirDef::addFile(FileDef *fd)
+ static QCString encodeDirName(const QCString &anchor)
+ {
+   // convert to md5 hash
+-  uchar md5_sig[16];
+   QCString sigStr(33);
+-  MD5Buffer((const unsigned char *)anchor.data(),anchor.length(),md5_sig);
+-  MD5SigToString(md5_sig,sigStr.rawData(),33);
++  MD5Data((const unsigned char *)anchor.data(),anchor.length(),sigStr.rawData());
+   return sigStr;
+ 
+   // old algorithm

devel/doxygen/files/patch-md5-dot

@@ -0,0 +1,70 @@
+--- src/dot.cpp.orig	2016-05-10 19:51:52 UTC
++++ src/dot.cpp
+@@ -39,6 +39,7 @@
+ #include "dirdef.h"
+ #include "vhdldocgen.h"
+ #include "ftextstream.h"
++#include <sys/types.h>
+ #include "md5.h"
+ #include "memberlist.h"
+ #include "groupdef.h"
+@@ -2271,10 +2272,8 @@ void DotGfxHierarchyTable::createGraph(D
+     }
+   }
+   writeGraphFooter(md5stream);
+-  uchar md5_sig[16];
+   QCString sigStr(33);
+-  MD5Buffer((const unsigned char *)theGraph.data(),theGraph.length(),md5_sig);
+-  MD5SigToString(md5_sig,sigStr.rawData(),33);
++  MD5Data((const unsigned char *)theGraph.data(),theGraph.length(),sigStr.rawData());
+   bool regenerate=FALSE;
+   if (checkAndUpdateMd5Signature(absBaseName,sigStr) || 
+       !checkDeliverables(absImgName,absMapName))
+@@ -3039,10 +3038,8 @@ QCString computeMd5Signature(DotNode *ro
+     }
+   }
+   writeGraphFooter(md5stream);
+-  uchar md5_sig[16];
+   QCString sigStr(33);
+-  MD5Buffer((const unsigned char *)buf.data(),buf.length(),md5_sig);
+-  MD5SigToString(md5_sig,sigStr.rawData(),33);
++  MD5Data((const unsigned char *)buf.data(),buf.length(),sigStr.rawData());
+   graphStr=buf.data();
+   //printf("md5: %s | file: %s\n",sigStr,baseName.data());
+   return sigStr;
+@@ -3954,10 +3951,8 @@ QCString DotDirDeps::writeGraph(FTextStr
+   FTextStream md5stream(&theGraph);
+   //m_dir->writeDepGraph(md5stream);
+   writeDotDirDepGraph(md5stream,m_dir,linkRelations);
+-  uchar md5_sig[16];
+   QCString sigStr(33);
+-  MD5Buffer((const unsigned char *)theGraph.data(),theGraph.length(),md5_sig);
+-  MD5SigToString(md5_sig,sigStr.rawData(),33);
++  MD5Data((const unsigned char *)theGraph.data(),theGraph.length(),sigStr.rawData());
+   bool regenerate=FALSE;
+   if (checkAndUpdateMd5Signature(absBaseName,sigStr) ||
+       !checkDeliverables(graphFormat==GOF_BITMAP ? absImgName :
+@@ -4099,10 +4094,8 @@ void generateGraphLegend(const char *pat
+   md5stream << "  Node18 -> Node9 [dir=\"back\",color=\"darkorchid3\",fontsize=\"" << FONTSIZE << "\",style=\"dashed\",label=\"m_usedClass\",fontname=\"" << FONTNAME << "\"];\n";
+   md5stream << "  Node18 [shape=\"box\",label=\"Used\",fontsize=\"" << FONTSIZE << "\",height=0.2,width=0.4,fontname=\"" << FONTNAME << "\",color=\"black\",URL=\"$classUsed" << Doxygen::htmlFileExtension << "\"];\n";
+   writeGraphFooter(md5stream);
+-  uchar md5_sig[16];
+   QCString sigStr(33);
+-  MD5Buffer((const unsigned char *)theGraph.data(),theGraph.length(),md5_sig);
+-  MD5SigToString(md5_sig,sigStr.rawData(),33);
++  MD5Data((const unsigned char *)theGraph.data(),theGraph.length(),sigStr.rawData());
+   QCString absBaseName = (QCString)path+"/graph_legend";
+   QCString absDotName  = absBaseName+".dot";
+   QCString imgExt = getDotImageExtension();
+@@ -4507,10 +4500,8 @@ QCString DotGroupCollaboration::writeGra
+   }
+ 
+   writeGraphFooter(md5stream);
+-  uchar md5_sig[16];
+   QCString sigStr(33);
+-  MD5Buffer((const unsigned char *)theGraph.data(),theGraph.length(),md5_sig);
+-  MD5SigToString(md5_sig,sigStr.rawData(),33);
++  MD5Data((const unsigned char *)theGraph.data(),theGraph.length(),sigStr.rawData());
+   QCString imgExt = getDotImageExtension();
+   QCString imgFmt = Config_getEnum(DOT_IMAGE_FORMAT);
+   QCString baseName    = m_diskName;

devel/doxygen/files/patch-md5-memberdef

@@ -0,0 +1,23 @@
+--- src/memberdef.cpp.orig	2015-01-03 22:38:57 UTC
++++ src/memberdef.cpp
+@@ -17,6 +17,7 @@
+ #include <qglobal.h>
+ #include <qregexp.h>
+ #include <assert.h>
++#include <sys/types.h>
+ #include "md5.h"
+ #include "memberdef.h"
+ #include "membername.h"
+@@ -3326,11 +3327,9 @@ void MemberDef::setAnchor()
+   }
+ 
+   // convert to md5 hash
+-  uchar md5_sig[16];
+   QCString sigStr(33);
+-  MD5Buffer((const unsigned char *)memAnchor.data(),memAnchor.length(),md5_sig);
+   //printf("memAnchor=%s\n",memAnchor.data());
+-  MD5SigToString(md5_sig,sigStr.rawData(),33);
++  MD5Data((const unsigned char *)memAnchor.data(),memAnchor.length(),sigStr.rawData());
+   m_impl->anc = "a"+sigStr;
+ }
+ 

devel/doxygen/files/patch-md5-membergroup

@@ -0,0 +1,24 @@
+--- src/membergroup.cpp.orig	2015-01-03 22:38:57 UTC
++++ src/membergroup.cpp
+@@ -28,6 +28,7 @@
+ #include "docparser.h"
+ #include "marshal.h"
+ #include "entry.h"
++#include <sys/types.h>
+ #include "md5.h"
+ 
+ //static QCString idToName(int id)
+@@ -307,12 +308,10 @@ void MemberGroup::setInGroup(bool b)
+ 
+ QCString MemberGroup::anchor() const
+ {
+-  uchar md5_sig[16];
+   QCString sigStr(33);
+   QCString locHeader = grpHeader;
+   if (locHeader.isEmpty()) locHeader="[NOHEADER]";
+-  MD5Buffer((const unsigned char *)locHeader.data(),locHeader.length(),md5_sig);
+-  MD5SigToString(md5_sig,sigStr.rawData(),33);
++  MD5Data((const unsigned char *)locHeader.data(),locHeader.length(),sigStr.rawData());
+   return "amgrp"+sigStr;
+ }
+ 

devel/doxygen/files/patch-md5-util

@@ -0,0 +1,48 @@
+--- src/util.cpp.orig	2015-01-03 22:45:44 UTC
++++ src/util.cpp
+@@ -19,6 +19,7 @@
+ #include <errno.h>
+ #include <math.h>
+ 
++#include <sys/types.h>
+ #include "md5.h"
+ 
+ #include <qregexp.h>
+@@ -5335,16 +5336,16 @@ QCString convertNameToFile(const char *n
+     if (resultLen>=128) // prevent names that cannot be created!
+     {
+       // third algorithm based on MD5 hash
+-      uchar md5_sig[16];
+       QCString sigStr(33);
+-      MD5Buffer((const unsigned char *)result.data(),resultLen,md5_sig);
+-      MD5SigToString(md5_sig,sigStr.rawData(),33);
++      MD5Data((const unsigned char *)result.data(),resultLen,sigStr.rawData());
+       result=result.left(128-32)+sigStr; 
+     }
+   }
+   if (createSubdirs)
+   {
++#if MAP_ALGO==ALGO_COUNT || MAP_ALGO==ALGO_CRC16
+     int l1Dir=0,l2Dir=0;
++#endif
+ 
+ #if MAP_ALGO==ALGO_COUNT 
+     // old algorithm, has the problem that after regeneration the
+@@ -5375,12 +5376,13 @@ QCString convertNameToFile(const char *n
+     l2Dir = (dirNum>>4)&0xff;
+ #elif MAP_ALGO==ALGO_MD5
+     // third algorithm based on MD5 hash
+-    uchar md5_sig[16];
+-    MD5Buffer((const unsigned char *)result.data(),result.length(),md5_sig);
+-    l1Dir = md5_sig[14]&0xf;
+-    l2Dir = md5_sig[15];
++    char md5[33];
++    MD5Data((const unsigned char *)result.data(),result.length(),md5);
++    result.prepend(QCString().sprintf("d%c/d%c%c/",md5[29],md5[30],md5[31]));
+ #endif
++#if MAP_ALGO==ALGO_COUNT || MAP_ALGO==ALGO_CRC16
+     result.prepend(QCString().sprintf("d%x/d%02x/",l1Dir,l2Dir));
++#endif
+   }
+   //printf("*** convertNameToFile(%s)->%s\n",name,result.data());
+   return result;

devel/doxygen/files/patch-qtools_CMakeLists.txt

@@ -0,0 +1,8 @@
+--- qtools/CMakeLists.txt.orig	2015-05-31 19:01:12 UTC
++++ qtools/CMakeLists.txt
+@@ -1,4 +1,4 @@
+-include_directories(.)
++include_directories(BEFORE .)
+ 
+ list(APPEND qtools_src
+ qbuffer.cpp

devel/doxygen/files/patch-src_CMakeLists.txt

@@ -0,0 +1,21 @@
+--- src/CMakeLists.txt.orig	2015-05-31 19:01:12 UTC
++++ src/CMakeLists.txt
+@@ -1,8 +1,7 @@
+ # vim:ts=4:sw=4:expandtab:autoindent:
+ 
+-include_directories(
++include_directories(BEFORE
+     ${CMAKE_SOURCE_DIR}/qtools
+-    ${CMAKE_SOURCE_DIR}/libmd5
+     ${CMAKE_SOURCE_DIR}/vhdlparser/
+     ${CMAKE_SOURCE_DIR}/src
+     ${CLANG_INCLUDEDIR}
+@@ -229,7 +228,7 @@ target_link_libraries(doxygen
+     _doxygen
+     doxycfg
+     qtools
+-    md5
++    md
+     vhdlparser
+     ${SQLITE3_LIBRARIES}
+     ${ICONV_LIBRARIES}

devel/doxygen/files/patch-src_formula.cpp

@@ -0,0 +1,15 @@
+Upstream git commit 03daff4 resolving a problem with Ghostscript 9.50.
+
+--- src/formula.cpp
++++ src/formula.cpp
+@@ -193,8 +193,8 @@ void FormulaList::generateBitmaps(const char *path)
+       // used.  
+ 
+       char gsArgs[4096];
+-      sprintf(gsArgs,"-q -g%dx%d -r%dx%dx -sDEVICE=ppmraw "
+-                    "-sOutputFile=%s.pnm -dNOPAUSE -dBATCH -- %s.ps",
++      sprintf(gsArgs,"-q -g%dx%d -r%dx%d -sDEVICE=ppmraw "
++                    "-sOutputFile=%s.pnm -dNOPAUSE -dBATCH -dNOSAFER %s.ps",
+                     gx,gy,(int)(scaleFactor*72),(int)(scaleFactor*72),
+                     formBase.data(),formBase.data()
+              );